Agah Karakuzu
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Selected Talks
2022
Towards comparable MRI: The role of open-source software and community data standards
In this educational, I present the currently available software tools and BIDS standard for quantitative MRI from a computer science …
Jun 8, 2022 12:00 AM
OHBM 2022 | qMRI for In Vivo Histology From Six Perspectives
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Slides
Vendor-neutral sequences (VENUS) improve multicenter reproducibility of quantitative MRI
Winner of Reproducible Research and White Matter SG group 1st place awards and Summa Cum Laude in the Annual Meeting of ISMRM. The main …
May 8, 2022 12:00 AM
ISMRM 2022 Annual Meeting
Agah Karakuzu
,
Julien Cohen-Adad
,
Nikola Stikov
PDF
Code
Slides
It all starts with one letter, the same queue: When quality (QC) meets quantity (qMRI)
This is a love story between qMRI and QC. They came across while waiting at the infamously long queue of clinical translation. They …
Jan 22, 2022 12:00 AM
Quality Conversations webinar series on niQC & open science
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Slides
2021
Sneak peek at the VENUS (vendor-neutral sequences) in a proprietary sky
Vendor-neutral sequences (VENUS) shines bright in a dark proprietary sky to shine some light on unifying qMRI pulse sequence …
Sep 8, 2021 12:00 AM
Workshop on MRI Acquisition & Reconstruction (Martinos Center)
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On Modeling with Dimitri Novikov, Valerij Kiselev and Sune Jespersen
A special MRM Highlight feature that was a roundtable discussion between MRM Highlights contributor Agah Karakuzu and the authors of an …
May 22, 2021 3:30 PM
MRM Highlights
PDF
Slides
Video
Scientific computing with Python: From acoustic dissonance to magnetic resonance
Invited
My talk at the ISMRM WMSG business meeting about the meta-analysis of MRI biomarkers of myelin. Check out this
interactive book
to …
May 10, 2021 3:30 PM
ISMRM 2021 Annual Meeting, Sunrise Educational Session
Code
Slides
Video
Interactive plots and the spectrum of data visualization
Invited
x3
In this presentation, I tried to breakdown the components of a data visualization practice that facilitates the creation of …
May 1, 2021 11:35 AM
BrainHack School 2019-2020, QBIN SciComm 2021
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Slides
Video
Communicating Science Openly with Nikola Stikov
Invited
Nikola Stikov talks about the history and future of academic publishing and the need for transparency, and Agah Karakuzu gives a live …
Apr 1, 2021 12:00 AM
QBIN SciComm Seminars 2021
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Slides
Video
2020
NeuroLibre: A sprout of living publications with Elizabeth DuPre
Invited
We describe how NeuroLibre can serve as a curated repository of interactive neuroscience notebooks that seamlessly integrate data, …
Dec 1, 2020 12:00 AM
Neuro-Gairdner Open Science in Action Symposium 2020
Code
Slides
Video
BrainHack Proceedings
Brainhack Proceedings is a community driven, free and open publication venue, that aims to host stories as the output of your Brainhack …
Nov 1, 2020 12:00 AM
BrainHack Global 2020
Code
Video
qMRI-BIDS: A BIDS extension for quantitative MRI
We present our work on an extension proposal for the BIDS format that allows researchers to efficiently describe and share multimodal …
Sep 1, 2020 12:00 AM
OHBM OSR 2020 Emergent Session
Gilles de Hollander
,
Tibor Auer
,
Alberto Lazari
,
Christophe Philips
Code
Video
Transparent workflows - From scanner to publication
Keynote
Invited
x3
In this keynote, I talk about open workflows, comparing them to a journey to the center of a multi-layered neuroimaging globe. Where …
Jun 24, 2020 11:35 AM
OHBM OSR: Reproducible workflows, Workshop: From acquisition to publication, Workshop: ISMRM Turkish Chapter
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Slides
Video
Divide and Conquer m-scripts
Invited
I took a spaghetti script written in MATLAB and turned it into an understandable and reusable code living happily in a powerful GitHub …
Jun 17, 2020 11:35 AM
OHBM BrainHack 2020
Code
Slides
Video
Docker for MRI scientists
Invited
The arrival of Docker containers has revolutionized the way software is developed, tested and pushed to production. Billions of …
Jan 22, 2020 3:30 PM
OpenMR Benelux 2020
Code
Slides
An interactive meta-analysis of MRI biomarkers of myelin
My talk at the ISMRM WMSG business meeting about the meta-analysis of MRI biomarkers of myelin. Check out this
interactive book
to …
Jan 22, 2020 3:30 PM
ISMRM White Matter Study Group Business Meeting 2020
PDF
Code
Slides
2019
Docker containers made fun - Let it run!
Docker can run frozen environments inside lightweight boxes isolated from your host machine. When you have many containers running, it …
Apr 23, 2019 12:00 PM
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